miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|240345794|gb|GR347774.1|GR347774 ACACCCAAAGTGCCTATCCATGCTTTAGTGCCAGTGCTAACAAATAAGCAGCGTGTTACAATAAACACACAATGTTTTCT
ACTCCCTCCGTCCAAGAATAGATGTCTTAGGTTTTTCAAATTTTGGATGAATCTATATACTAAATAGTGTCTAGATTCAT
CCAAATTTTAACAAATTTGAGACATCTATTTTAGGACGGAGGGAGTAGTTTATTTGTTGCCAGAATCCAAGCAAATAATC
TTGCCCATCATATCTATAGCACGAACCCACAACCCACACCATAATACTGTTGCTACTATATCCCATAAGTACTAGTACTT
GATGTCCGACATGGATATTACAGGAGAGGAATCGTTTCTTATGCCTCGTAATAGGCAAAGAAGTCCCAGACCCATCTAAG
AAGCAGTAAGAATTTCACCGTGTGGCATGATGGCGATCTTTGCTGGTTCTGCTGATGTTTCCACTTGTTGTGCCCTTTTA
CCGGAGCCACAGTATTCGTCTAGCTCTCTCTTTGCAAAGGTTGGAAGAACAAATGCTGCCCTATGCATCTCTGTATTATA
AAATCTGATATCCCTCCCAGCTTTCATAGCGCCTTCTAGTTTTTCAATTGGATTTATGGGTGTCAGGAAGTTGACTGGTG
GACCCTCTTTGGCACATAGCAAAAACCCAATTGCGCCACTAGGATATGTTGGGACACTTGTCCATGCATAGTGGACAGAA
CCCTTGAAAGTCTCACGGCAGATCGAGAGCATGTCCTGAATGAGATGTGTAT




Most similar to sp|Q94BN2|SPSY_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94BN2|SPSY_ARATH Spermine synthase OS=Arabidopsis thaliana
           GN=SPMS PE=1 SV=1
          Length = 359

 Score =  141 bits (356), Expect = 4e-33
 Identities = 64/90 (71%), Positives = 79/90 (87%)
 Frame = -3

Query: 770 THLIQDMLSICRETFKGSVHYAWTSVPTYPSGAIGFLLCAKEGPPVNFLTPINPIEKLEG 591
           THLI+DM+SICR+TFK SVHYAW+SVPTYPSG IGF+LC+ EGP V+F  PINPIEKL+G
Sbjct: 265 THLIEDMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDG 323

Query: 590 AMKAGRDIRFYNTEMHRAAFVLPTFAKREL 501
           AM   R+++FYN++MHRAAF LPTF +RE+
Sbjct: 324 AMTHKRELKFYNSDMHRAAFALPTFLRREV 353